Handbook of Research on Computational and Systems Biology > Section 4: Structural And Mathematical Modeling > Chapter 24: Structural Alignment Of Rnas With Pseudoknots

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Handbook of Research on Computational and Systems Biology

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Table of Contents

Title Page

Editorial Advisory Board

List Of Reviewers

Preface

Acknowledgment

Section 1: Drug Development And Medicine

Section 2: Method Development In Bioinformatics

Section 3: Biological Networks And Pathways

Section 4: Structural And Mathematical Modeling

Chapter 24: Structural Alignment Of Rnas With Pseudoknots

Abstract

Introduction

Pseudoknot Definitions

Definition Of Structural Alignment

Algorithm For Regular Structure

Algorithm For Standard Pseudoknots

Algorithm For Simple Non-Standard Pseudoknots

Algorithm For 2-Level Recursive Pseudoknots

Experimental Results

Conclusion

Chapter 25: Finding Attractors On A Folding Energy Landscape

Chapter 26: Visualization Of Protein 3D Structures In `Double-Centroid' Reduced Representation

Chapter 27: Mechanical Models Of Cell Adhesion Incorporating Nonlinear Behavior And Stochastic Rupture Of The Bonds

Chapter 28: A Multiscale Computational Model Of Chemotactic Axon Guidance

Compilation Of References

About The Contributors

Index

550 Structural Alignment of RNAs with Pseudoknots Thomas K. F. Wong The University of Hong Kong, Hong Kong S. M. Yiu The University of Hong Kong, Hong Kong Chapter 24

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