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In general, an HIDS is designed to monitor, detect, and log the modifications to the files on a filesystem. That is, it is designed to detect file tampering and trojaned binaries. For every file, an HIDS creates a cryptographic hash of the file data and records it in a database; any change to a file results in a different hash being generated. Whenever an HIDS audits a filesystem, it compares the current hash of every file with its counterpart in the database; if the two differ, the file is flagged.
In principle this is a good idea, but . . .